Modelling A Random Patch Extraction with A Deep U-Net for the Heart Image Segmentation Process

Authors

  • Nandhagopal Subaramani, E. Sasikala

Keywords:

Statistical shape model, 3D segmentation, Deep learning, Image segmentation, Feature extraction.

Abstract

Deep learning is extensively utilized in medical image processing. Moreover, present deep neural network models were completely based on the huge amount of labelled training data; but, medical image-based segmentation tasks generally suffer from labelling smaller quality data as these medical image labelling are extremely costly and time-consuming. To overcome these complexities, this work anticipates a new image patch extraction strategy concerning features of heart images which may produce numerous simulated images from a smaller number of real-time images. Initially, shape information regarding real labelled images is modelled with random patch extraction by sampling the input images. Subsequently, these tumor shapes are labelled using textures of a 3D thin plate to produce simulated images. At last, these simulated and real images are provided for training deep neural networks with a U-net model for segmentation. The anticipated model undergoes segmenting, which can be utilized in any anatomical structure-based segmentation tasks with deep neural network architecture. The Automated Cardiac Diagnosis Challenge (ACDC) dataset has been considered for performing segmentation that includes 3D convolutional neural networks. The experimental outcomes demonstrate that the proposed segmentation strategy may enhance the accuracy of the existing segmentation process based on deep neural networks.

Downloads

Download data is not yet available.

References

Litjens G, et al. A survey on deep learning in medical image analysis. Med Image Anal 2017; 42:60-88.

Milletari F, Navab N, Ahmadi SA. V-Net: Fully convolutional neural networks for volumetric medical image segmentation. In 2016 Fourth International Conference on 3D Vision (3DV), 2016, pp. 565-571.

Dou Q, et al. 3D deeply supervised network for automated segmentation of volumetric medical images. Med Image Anal 2017; 41:40-54.

Bernard O, et al. Deep learning techniques for automatic MRI cardiac multi-structures segmentation and diagnosis: Is the problem solved? IEEE Trans Med Imaging 2018; 37:2514-25.

Luo G, Dong S, Wang K, Zuo W, Cao S, Zhang H. Multi-views fusion CNN for left ventricular volumes estimation on cardiac MR images. IEEE Trans Biomed Eng 2018; 65:1924-34.

Zreik M, et al. Deep learning analysis of the myocardium in coronary CT angiography for identification of patients with functionally significant coronary artery stenosis. Med Image Anal 2018; 44:72-85.

Shrestha S, Sengupta PP. Machine learning for nuclear cardiology: The way forward. J Nucl Cardiol 2018: 1-4.

Slomka PJ, Dey D, Sitek A, Motwani M, Berman DS, Germano G. Cardiac imaging: Working towards fully-automated machine analysis & interpretation. Expert Rev Med Devices 2017; 14:197-212.

Wang T et al. A learning-based automatic segmentation and quantification method on left ventricle in gated myocardial perfusion SPECT imaging: A feasibility study. J Nucl Cardiol 2019: 1-12.

Betancur J, et al. Deep learning for predicting obstructive disease from fast myocardial perfusion SPECT: A multicenter study. JACC Cardiovasc Imaging 2018; 11:1654-63.

Xu Y, et al. Automated quality control for segmentation of myocardial perfusion SPECT. J Nucl Med 2009;50:1418-26.

Zech JR, Badgeley MA, Liu M, Costa AB, Titano JJ, Oermann EK. Variable generalization performance of a deep learning model to detect pneumonia in chest radiographs: A cross-sectional study. PLoS Med 2018;15:e1002683.

Minis K-K, Pont-Tuset J, Arbeláez P, Van Gool L. Deep retinal image understanding. Cham: Springer; 2016. p. 140-8.

Chen, C., et al.: Improving the generalizability of convolutional neural network-based segmentation on CMR images. Front. Cardiovasc. Med. 7, 105 (2020)

Dou, Q., Ouyang, C., Chen, C., Chen, H., Heng, P.A.: Unsupervised cross-modality domain adaptation of convnets for biomedical image segmentations with adversarial loss, pp. 691–697 (2018)

Isensee, F., Jaeger, P.F., Full, P.M., Wolf, I., Engelhardt, S., Maier-Hein, K.H.: Automatic cardiac disease assessment on cine-MRI via time-series segmentation and domain-specific features. In: Pop, M. et al. (eds.) STARCOM 2017. LNCS, vol. 10663, pp. 120–129. Springer, Cham (2018).

Tao, Q., et al.: Deep learning-based method for fully automatic quantifying left ventricle function from cine MR images: a multivendor, multicenter study. Radiology 290, 180513 (2018)

Zhu, J.Y., Park, T., Isola, P., Efros, A.A.: Unpaired image-to-image translation using cycle-consistent adversarial networks. In: ICCV (2017)

Yang, Y., Soatto, S.: Fda: Fourier domain adaptation for semantic segmentation. In: CVPR (2020)

Avanti, M., Kheradvar, A., Jafarkhani, H.: A combined deep-learning and deformable-model approach to fully automatically segment the left ventricle in cardiac MRI. Med. Image Anal. 30, 108–119 (2015)

Sengur, U. Budak, Y. Akbulut, M. Karabatak, and E. Tanyildizi, “A survey on neutrosophic medical image segmentation,” in Neutrosophic Set in Medical Image Analysis, pp. 145–165, Academic Press, MA, USA, 2019

Sharma and L. M. Aggarwal, “Automated medical image segmentation techniques,” Journal of medical physics/Association of Medical Physicists of India, vol. 35, no. 1, 2010.

Rajpurkar, J. Irvin, R. L. Ball et al., “Deep learning for chest radiograph diagnosis: a retrospective comparison of the CheXNeXt algorithm to practicing radiologists,” PLoS Medicine, vol. 15, no. 11, Article ID e1002686, 2018

Shen, G. Wu, and H. I. Suk, “Deep learning in medical image analysis,” Annual Review of Biomedical Engineering, vol. 19, pp. 221–248, 2017

Hesamian, W. Jia, X. He, and P. Kennedy, “Deep learning techniques for medical image segmentation: achievements and challenges,” Journal of Digital Imaging, vol. 32, no. 4, pp. 582–596, 2019.

Liu, L. Song, S. Liu, and Y. Zhang, “A review of deeplearning-based medical image segmentation methods,” Sustainability, vol. 13, no. 3, p. 1224, 2021.

Lei, R. Wang, Y. Wan, B. Zhang, H. Meng, and A. K. Nandi, “Medical image segmentation using deep learning: a survey,” 2020, https://arxiv.org/abs/2009.13120.

W. Zhang, R. Li, H. Deng et al., “Deep convolutional neural networks for multi-modality isointense infant brain image segmentation,” NeuroImage, vol. 108, pp. 214–224, 2015.

L. C. Chen, G. Papandreou, F. Schroff, and H. Adam, “Rethinking atrous convolution for semantic image segmentation,” 2017, https://arxiv.org/abs/1706.05587.

G. Wang, W. Li, M. A. Zuluaga et al., "Interactive medical image segmentation using deep learning with image-specific fine-tuning"," IEEE Transactions on Medical Imaging, vol. 37, no. 7, pp. 1562–1573, 2018.

Downloads

Published

12.06.2024

How to Cite

Nandhagopal Subaramani. (2024). Modelling A Random Patch Extraction with A Deep U-Net for the Heart Image Segmentation Process. International Journal of Intelligent Systems and Applications in Engineering, 12(4), 1509–1516. Retrieved from https://ijisae.org/index.php/IJISAE/article/view/6447

Issue

Section

Research Article